Variant report

Variant	rs6879911
Chromosome Location	chr5:76085941-76085942
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:76083391..76086055-chr5:76095285..76096948,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11948340	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11954982	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2242984	1.00[EUR][1000 genomes]
rs73131652	1.00[EUR][1000 genomes]
rs73131656	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73131665	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7729801	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1035135	chr5:75927027-76092058	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv462213	chr5:76067624-76112869	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv598682	chr5:76067624-76112869	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1015997	chr5:76079720-76129241	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1031491	chr5:76083382-76129241	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2763908	chr5:76083394-76134777	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76080400-76086800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:76080600-76086800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:76080800-76086600	Weak transcription	Colonic Mucosa	Colon
4	chr5:76081600-76088800	Enhancers	Stomach Mucosa	stomach
5	chr5:76081800-76086200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:76083000-76087800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr5:76083200-76086000	Weak transcription	HSMMtube	muscle
8	chr5:76083400-76086600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:76083400-76086600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:76083400-76089200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr5:76083600-76086600	Weak transcription	Aorta	Aorta
12	chr5:76084000-76088200	Enhancers	Fetal Lung	lung
13	chr5:76084200-76088200	Enhancers	Fetal Stomach	stomach
14	chr5:76084200-76088400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr5:76084400-76086000	Weak transcription	HepG2	liver
16	chr5:76084400-76086800	Weak transcription	Pancreas	Pancrea
17	chr5:76084600-76087400	Weak transcription	Liver	Liver
18	chr5:76085000-76086200	Enhancers	Lung	lung
19	chr5:76085200-76086000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr5:76085200-76087600	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr5:76085200-76088000	Enhancers	NHLF	lung
22	chr5:76085400-76086000	Enhancers	Gastric	stomach
23	chr5:76085400-76086000	Enhancers	Left Ventricle	heart
24	chr5:76085400-76087800	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr5:76085400-76088000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:76085400-76088000	Enhancers	Adipose Nuclei	Adipose
27	chr5:76085400-76088000	Enhancers	Spleen	Spleen
28	chr5:76085400-76088200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr5:76085400-76088200	Enhancers	HMEC	breast
30	chr5:76085600-76086000	Enhancers	Hela-S3	cervix
31	chr5:76085600-76086000	Flanking Active TSS	NH-A	brain
32	chr5:76085600-76086000	Enhancers	NHDF-Ad	bronchial
33	chr5:76085600-76086400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr5:76085600-76087200	Flanking Active TSS	A549	lung
35	chr5:76085600-76087800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:76085600-76088000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr5:76085600-76088000	Enhancers	Brain Hippocampus Middle	brain
38	chr5:76085600-76088200	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr5:76085600-76088200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr5:76085600-76088400	Enhancers	Fetal Muscle Leg	muscle
41	chr5:76085600-76090400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr5:76085800-76086000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr5:76085800-76086000	Enhancers	Fetal Intestine Large	intestine
44	chr5:76085800-76086000	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr5:76085800-76086200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr5:76085800-76086200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr5:76085800-76086200	Enhancers	Fetal Muscle Trunk	muscle
48	chr5:76085800-76086200	Flanking Active TSS	HUVEC	blood vessel
49	chr5:76085800-76086200	Flanking Active TSS	Osteobl	bone
50	chr5:76085800-76086400	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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