Variant report

Variant	rs6880719
Chromosome Location	chr5:128235364-128235365
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:128232489..128236420-chr5:128429140..128432073,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066583	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1469052	0.89[AFR][1000 genomes]
rs1476084	0.88[AFR][1000 genomes]
rs1476085	0.92[AFR][1000 genomes]
rs1833669	0.89[AFR][1000 genomes]
rs1833670	0.86[AFR][1000 genomes]
rs2189661	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2526250	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2577474	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2577484	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2577490	1.00[ASN][1000 genomes]
rs258001	1.00[ASN][1000 genomes]
rs55670869	0.88[AFR][1000 genomes]
rs56089205	0.92[AFR][1000 genomes]
rs56134012	0.88[AFR][1000 genomes]
rs56376540	0.95[AFR][1000 genomes]
rs66636142	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6860809	0.86[AFR][1000 genomes]
rs6877453	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6878765	0.92[AFR][1000 genomes]
rs72787296	0.85[AFR][1000 genomes]
rs72787299	0.87[AFR][1000 genomes]
rs72787302	0.90[AFR][1000 genomes]
rs72789203	0.90[AFR][1000 genomes]
rs72795260	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795261	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795278	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599699	chr5:128172808-128259451	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv462443	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv599700	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882837	chr5:128200502-128287228	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882838	chr5:128203439-128287228	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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