Variant report

Variant	rs6860809
Chromosome Location	chr5:128172594-128172595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11953186	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469052	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476084	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476085	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17211823	1.00[ASN][1000 genomes]
rs1833669	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1833670	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158174	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158175	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2871597	1.00[ASN][1000 genomes]
rs4425557	0.91[ASN][1000 genomes]
rs55670869	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56089205	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56134012	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs56376540	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60700363	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595862	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66567641	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67976958	1.00[ASN][1000 genomes]
rs6877453	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6878765	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6880719	0.81[CEU][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs6896258	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787288	1.00[ASN][1000 genomes]
rs72787291	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787294	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787296	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787299	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787302	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789203	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72795260	0.84[AFR][1000 genomes]
rs72795261	0.84[AFR][1000 genomes]
rs7732884	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128162200-128182800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:128172400-128172600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:128172400-128172600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:128172400-128173000	Enhancers	Fetal Heart	heart

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