Variant report

Variant	rs66567641
Chromosome Location	chr5:128147153-128147154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11953186	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469052	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476084	1.00[ASN][1000 genomes]
rs1476085	1.00[ASN][1000 genomes]
rs17211823	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1833669	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1833670	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158174	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158175	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2871597	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4425557	0.91[ASN][1000 genomes]
rs55670869	1.00[ASN][1000 genomes]
rs56089205	1.00[ASN][1000 genomes]
rs56134012	0.81[ASN][1000 genomes]
rs56376540	1.00[ASN][1000 genomes]
rs60700363	1.00[ASN][1000 genomes]
rs6595862	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67976958	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6860809	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877453	0.81[ASN][1000 genomes]
rs6878765	0.81[ASN][1000 genomes]
rs6896258	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787288	1.00[ASN][1000 genomes]
rs72787291	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787294	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787296	1.00[ASN][1000 genomes]
rs72787299	1.00[ASN][1000 genomes]
rs72787302	1.00[ASN][1000 genomes]
rs72789203	1.00[ASN][1000 genomes]
rs7732884	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3392548	chr5:128139102-128159002	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128143600-128151000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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