Variant report

Variant	rs6896258
Chromosome Location	chr5:128171777-128171778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:128170003..128172178-chr5:128179112..128180892,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11953186	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469052	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476084	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476085	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17211823	1.00[ASN][1000 genomes]
rs1833669	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1833670	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158174	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158175	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2871597	1.00[ASN][1000 genomes]
rs4425557	0.91[ASN][1000 genomes]
rs55670869	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56089205	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56134012	0.81[ASN][1000 genomes]
rs56376540	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60700363	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595862	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66567641	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67976958	1.00[ASN][1000 genomes]
rs6860809	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877453	0.81[ASN][1000 genomes]
rs6878765	0.81[ASN][1000 genomes]
rs6880719	0.81[CEU][hapmap]
rs72787288	1.00[ASN][1000 genomes]
rs72787291	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787294	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787296	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787299	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787302	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789203	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7732884	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128157600-128172400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:128162200-128182800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:128171600-128171800	Enhancers	Cortex derived primary cultured neurospheres	brain

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