Variant report

Variant	rs72787291
Chromosome Location	chr5:128159460-128159461
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11953186	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469052	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476084	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476085	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17211823	1.00[ASN][1000 genomes]
rs1833669	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1833670	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158174	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158175	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2871597	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4425557	0.91[ASN][1000 genomes]
rs55670869	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56089205	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56134012	0.81[ASN][1000 genomes]
rs56376540	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60700363	1.00[ASN][1000 genomes]
rs6595862	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66567641	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67976958	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6860809	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877453	0.81[ASN][1000 genomes]
rs6878765	0.81[ASN][1000 genomes]
rs6896258	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787288	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72787289	0.87[AFR][1000 genomes]
rs72787294	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787296	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787299	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787302	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789203	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7732884	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128157600-128172400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:128158800-128162400	Enhancers	HUVEC	blood vessel
3	chr5:128159000-128159600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:128159400-128162000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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