Variant report

Variant	rs7732884
Chromosome Location	chr5:128174614-128174615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:128165113..128167879-chr5:128172954..128174842,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11953186	1.00[ASN][1000 genomes]
rs1469052	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476084	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476085	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17211823	1.00[ASN][1000 genomes]
rs1833669	1.00[ASN][1000 genomes]
rs1833670	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158174	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158175	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2871597	1.00[ASN][1000 genomes]
rs4425557	0.91[ASN][1000 genomes]
rs55670869	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56089205	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56134012	0.81[ASN][1000 genomes]
rs56376540	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60700363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595862	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66567641	1.00[ASN][1000 genomes]
rs67976958	1.00[ASN][1000 genomes]
rs6860809	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877453	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6878765	0.81[ASN][1000 genomes]
rs6880719	0.90[CEU][hapmap]
rs6896258	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787288	1.00[ASN][1000 genomes]
rs72787291	1.00[ASN][1000 genomes]
rs72787294	1.00[ASN][1000 genomes]
rs72787296	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787299	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787302	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789203	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv599699	chr5:128172808-128259451	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv462443	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv599700	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128162200-128182800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:128174400-128175000	Enhancers	HUES48 Cell Line	embryonic stem cell

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