Variant report

Variant	rs6880917
Chromosome Location	chr5:108080817-108080818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:108062534..108064053-chr5:108078834..108081029,2	MCF-7	breast:
2	chr5:108060235..108074407-chr5:108078172..108087811,48	K562	blood:
3	chr5:108079486..108081928-chr5:108082794..108085941,4	MCF-7	breast:
4	chr5:108067076..108069295-chr5:108079575..108082340,2	MCF-7	breast:
5	chr5:108059312..108068052-chr5:108079113..108087366,42	K562	blood:
6	chr5:108079558..108082306-chr5:108082849..108087375,5	K562	blood:

Variant related genes	Relation type
ENSG00000272523	Chromatin interaction
ENSG00000151422	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12109934	0.80[ASN][1000 genomes]
rs4616948	0.90[ASN][1000 genomes]
rs57977516	0.96[ASN][1000 genomes]
rs59070487	0.92[ASN][1000 genomes]
rs6594335	0.96[ASN][1000 genomes]
rs6594337	0.94[ASN][1000 genomes]
rs6871517	0.94[ASN][1000 genomes]
rs6883442	0.84[ASN][1000 genomes]
rs6893574	0.96[ASN][1000 genomes]
rs6893743	0.96[ASN][1000 genomes]
rs73207536	0.88[ASN][1000 genomes]
rs73222017	0.96[ASN][1000 genomes]
rs73222018	0.96[ASN][1000 genomes]
rs73222019	0.96[ASN][1000 genomes]
rs73222024	0.96[ASN][1000 genomes]
rs73222036	0.98[ASN][1000 genomes]
rs7703860	0.92[ASN][1000 genomes]
rs7710347	0.88[ASN][1000 genomes]
rs7710960	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7713158	0.88[ASN][1000 genomes]
rs7715208	0.96[ASN][1000 genomes]
rs7723765	0.84[ASN][1000 genomes]
rs7725263	0.84[ASN][1000 genomes]
rs7734520	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108066600-108082600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:108079400-108082600	Weak transcription	Fetal Kidney	kidney
3	chr5:108079400-108083000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:108079800-108082600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:108079800-108083000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:108080000-108082600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:108080000-108082600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:108080000-108082600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:108080000-108082600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:108080000-108082600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:108080000-108082600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr5:108080000-108082600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:108080000-108082800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:108080000-108082800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:108080000-108082800	Weak transcription	Fetal Lung	lung
16	chr5:108080000-108082800	Weak transcription	Osteobl	bone
17	chr5:108080200-108082000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:108080200-108082800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr5:108080200-108083000	Weak transcription	HSMMtube	muscle
20	chr5:108080200-108083600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr5:108080400-108082600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr5:108080400-108082600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:108080400-108082800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:108080400-108083400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr5:108080400-108083400	Weak transcription	HSMM	muscle
26	chr5:108080600-108081800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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