Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10515394	0.82[ASN][1000 genomes]
rs12109934	0.88[ASN][1000 genomes]
rs4616948	0.98[ASN][1000 genomes]
rs57977516	0.88[ASN][1000 genomes]
rs59070487	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6594335	0.88[ASN][1000 genomes]
rs6594337	0.90[ASN][1000 genomes]
rs6871517	0.90[ASN][1000 genomes]
rs6880917	0.88[ASN][1000 genomes]
rs6883442	0.92[ASN][1000 genomes]
rs6893574	0.88[ASN][1000 genomes]
rs6893743	0.88[ASN][1000 genomes]
rs73222017	0.88[ASN][1000 genomes]
rs73222018	0.88[ASN][1000 genomes]
rs73222019	0.88[ASN][1000 genomes]
rs73222024	0.88[ASN][1000 genomes]
rs73222036	0.90[ASN][1000 genomes]
rs7703860	0.92[ASN][1000 genomes]
rs7710347	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713158	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7715208	0.88[ASN][1000 genomes]
rs7723765	0.92[ASN][1000 genomes]
rs7725263	0.92[ASN][1000 genomes]
rs7734520	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv471039	chr5:108133967-108245089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108146800-108183600	Weak transcription	Ovary	ovary
2	chr5:108147000-108165800	Weak transcription	Left Ventricle	heart
3	chr5:108147000-108198800	Weak transcription	Aorta	Aorta
4	chr5:108147000-108208800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:108150400-108171400	Weak transcription	NHDF-Ad	bronchial
6	chr5:108153400-108176400	Weak transcription	NHLF	lung
7	chr5:108154800-108165600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:108154800-108176400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:108156000-108174400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:108156400-108178200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:108156600-108166400	Weak transcription	Colon Smooth Muscle	Colon
12	chr5:108160200-108172400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr5:108164400-108166600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:108164800-108182400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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