Variant report

Variant	rs6882000
Chromosome Location	chr5:118723034-118723035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:118656086..118659257-chr5:118722811..118726060,3	K562	blood:
2	chr5:118722075..118725001-chr5:118726999..118729970,2	K562	blood:
3	chr5:118702494..118705018-chr5:118721326..118723316,2	K562	blood:
4	chr5:118722584..118724806-chr5:118734610..118737360,3	K562	blood:
5	chr5:118720922..118723658-chr5:118726552..118728521,2	MCF-7	breast:
6	chr5:118721777..118723787-chr5:118732955..118735466,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10041464	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10055743	1.00[CEU][hapmap]
rs10060971	1.00[CHB][hapmap]
rs10064524	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10064783	1.00[CEU][hapmap]
rs10069480	1.00[CEU][hapmap]
rs1045241	0.89[YRI][hapmap]
rs1045242	0.93[YRI][hapmap]
rs12332329	0.90[YRI][hapmap]
rs17145259	1.00[CEU][hapmap]
rs3203922	0.93[YRI][hapmap]
rs3733856	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3797344	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3797345	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55933899	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56303741	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59406275	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876817	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6891981	0.97[EUR][1000 genomes]
rs72788136	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73790852	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7701561	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7722172	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7723933	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7734378	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9327100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030717	chr5:118709310-118836951	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118702800-118723800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:118702800-118736000	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:118704400-118728400	Weak transcription	Hela-S3	cervix
4	chr5:118704600-118723400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:118707600-118754600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:118709400-118727800	Weak transcription	Dnd41	blood
7	chr5:118709600-118723400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:118711400-118728400	Weak transcription	A549	lung
9	chr5:118711800-118725800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr5:118712200-118724600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr5:118712400-118726400	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr5:118712400-118732600	Genic enhancers	Primary B cells from peripheral blood	blood
13	chr5:118712800-118726200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr5:118714000-118723400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr5:118714000-118725200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr5:118714400-118725200	Weak transcription	Aorta	Aorta
17	chr5:118714400-118729200	Weak transcription	HSMMtube	muscle
18	chr5:118715000-118725000	Weak transcription	Fetal Thymus	thymus
19	chr5:118715200-118724800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:118715400-118728800	Weak transcription	Placenta	Placenta
21	chr5:118715800-118724800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr5:118716200-118723400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr5:118716200-118724800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr5:118717200-118731000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr5:118718600-118725200	Weak transcription	Stomach Mucosa	stomach
26	chr5:118718600-118726400	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr5:118718600-118737600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr5:118720200-118724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr5:118720400-118724400	Enhancers	Fetal Lung	lung
30	chr5:118720600-118723600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr5:118720600-118723600	Enhancers	Fetal Heart	heart
32	chr5:118720600-118724200	Genic enhancers	Primary B cells from cord blood	blood
33	chr5:118720600-118728600	Weak transcription	Thymus	Thymus
34	chr5:118720800-118724800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr5:118721200-118723400	Weak transcription	Colon Smooth Muscle	Colon
36	chr5:118721200-118724800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr5:118721200-118724800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr5:118721200-118725000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr5:118721200-118725000	Weak transcription	Right Atrium	heart
40	chr5:118721600-118723800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr5:118721600-118726800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr5:118721800-118726000	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr5:118721800-118728800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr5:118722000-118724800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr5:118722000-118725400	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr5:118722000-118725800	Enhancers	Adipose Nuclei	Adipose
47	chr5:118722200-118723800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr5:118722400-118723200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr5:118722400-118723200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr5:118722400-118723400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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