Variant report

Variant	rs6882107
Chromosome Location	chr5:108096014-108096015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108082592..108085092-chr5:108095737..108100494,4	K562	blood:
2	chr5:108089525..108092187-chr5:108094505..108096147,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151422	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10038669	0.96[CHD][hapmap];0.81[MEX][hapmap]
rs10044305	0.88[ASW][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[ASN][1000 genomes]
rs10073668	0.96[CHD][hapmap]
rs10079165	0.86[MEX][hapmap]
rs1109617	0.82[ASW][hapmap];0.81[MEX][hapmap]
rs13173714	0.82[ASW][hapmap];0.81[MEX][hapmap]
rs13180513	0.96[CHD][hapmap];0.86[MEX][hapmap]
rs2900035	0.88[ASW][hapmap];0.96[CHD][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.80[AMR][1000 genomes]
rs35398495	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4604227	0.92[CHD][hapmap]
rs4957789	0.81[MEX][hapmap]
rs6871143	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6871239	0.88[CHD][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs6873068	0.81[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6874229	0.96[CHD][hapmap];0.82[MEX][hapmap]
rs6880284	0.96[CHD][hapmap];0.86[MEX][hapmap]
rs6889550	0.81[AMR][1000 genomes]
rs6889967	1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7700630	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7710482	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7712956	0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7726708	0.97[ASN][1000 genomes]
rs9326747	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9326748	0.92[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108085600-108102600	Weak transcription	Lung	lung
2	chr5:108085600-108119800	Weak transcription	Left Ventricle	heart
3	chr5:108085800-108097800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:108085800-108097800	Weak transcription	Brain Angular Gyrus	brain
5	chr5:108086200-108119200	Weak transcription	Fetal Kidney	kidney
6	chr5:108086200-108120600	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:108088600-108097800	Weak transcription	Gastric	stomach
8	chr5:108089800-108119400	Weak transcription	Hela-S3	cervix
9	chr5:108089800-108119800	Weak transcription	HSMM	muscle
10	chr5:108090000-108105000	Weak transcription	NHLF	lung
11	chr5:108090000-108109800	Weak transcription	Adipose Nuclei	Adipose
12	chr5:108090200-108100600	Weak transcription	NHDF-Ad	bronchial
13	chr5:108090200-108127600	Weak transcription	NH-A	brain
14	chr5:108094200-108096200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
15	chr5:108094400-108096200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:108094800-108096200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:108094800-108096400	ZNF genes & repeats	Fetal Brain Female	brain
18	chr5:108094800-108099200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr5:108095000-108096400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:108095000-108096400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:108095000-108096400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:108095000-108096600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:108095000-108122600	Weak transcription	Right Ventricle	heart
24	chr5:108095200-108096200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
25	chr5:108095200-108096200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr5:108095200-108096400	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr5:108095200-108096400	ZNF genes & repeats	Fetal Muscle Leg	muscle
28	chr5:108095200-108096800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr5:108095400-108096400	ZNF genes & repeats	Fetal Lung	lung
30	chr5:108095400-108096400	ZNF genes & repeats	GM12878-XiMat	blood
31	chr5:108095400-108096600	Enhancers	Primary T cells from cord blood	blood
32	chr5:108095400-108096600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr5:108095600-108096200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:108095600-108096400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
35	chr5:108095600-108096400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr5:108095600-108096400	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr5:108095600-108096400	Enhancers	NHEK	skin
38	chr5:108095600-108096600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr5:108095600-108119400	Weak transcription	Aorta	Aorta
40	chr5:108095800-108099000	Weak transcription	A549	lung
41	chr5:108095800-108102600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr5:108096000-108096200	Genic enhancers	HMEC	breast
43	chr5:108096000-108096400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
44	chr5:108096000-108096400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr5:108096000-108096400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr5:108096000-108096400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr5:108096000-108096800	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr5:108096000-108100600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr5:108096000-108119600	Weak transcription	Primary B cells from cord blood	blood

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