Variant report

Variant	rs9326748
Chromosome Location	chr5:108154528-108154529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10038669	0.89[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.92[MKK][hapmap];0.84[TSI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10044305	0.88[ASW][hapmap];0.96[CEU][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10045220	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10060694	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10062204	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10063167	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10073668	1.00[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];0.84[TSI][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10079165	0.96[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1022045	0.92[JPT][hapmap]
rs10477431	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1109617	0.92[JPT][hapmap]
rs11240982	0.92[JPT][hapmap]
rs11739006	0.92[JPT][hapmap]
rs12153703	0.92[JPT][hapmap]
rs13171006	0.91[CEU][hapmap]
rs13173714	0.92[JPT][hapmap]
rs13180513	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1423457	0.92[JPT][hapmap]
rs17161476	0.92[JPT][hapmap]
rs2081126	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2081129	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2081130	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28637651	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28651469	0.81[EUR][1000 genomes]
rs2900035	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34125469	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4604227	0.85[CHD][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap];0.83[ASN][1000 genomes]
rs4957789	0.92[JPT][hapmap]
rs6594333	0.92[JPT][hapmap]
rs6594334	0.92[JPT][hapmap]
rs6594336	0.92[JPT][hapmap]
rs6594338	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6594340	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6871143	0.92[JPT][hapmap]
rs6871239	0.88[CHD][hapmap];0.92[JPT][hapmap]
rs6874229	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6875320	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6880284	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6882107	0.92[CHD][hapmap]
rs6889550	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6889967	0.92[JPT][hapmap]
rs6891194	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6895027	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7709267	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7710482	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7712834	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7712956	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7716320	0.92[JPT][hapmap]
rs7716498	0.92[JPT][hapmap]
rs7725391	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7726708	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7731891	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7735235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9285863	0.92[JPT][hapmap]
rs9326747	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9885082	0.85[ASN][1000 genomes]
rs9885168	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv471039	chr5:108133967-108245089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108146600-108156000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:108146800-108183600	Weak transcription	Ovary	ovary
3	chr5:108147000-108165800	Weak transcription	Left Ventricle	heart
4	chr5:108147000-108198800	Weak transcription	Aorta	Aorta
5	chr5:108147000-108208800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:108147800-108159200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:108150400-108171400	Weak transcription	NHDF-Ad	bronchial
8	chr5:108150800-108155600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr5:108152200-108156000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:108152400-108155000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:108153000-108154800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:108153400-108176400	Weak transcription	NHLF	lung
13	chr5:108153800-108154800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:108153800-108155200	Weak transcription	Colon Smooth Muscle	Colon
15	chr5:108154000-108156000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:108154400-108154600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr5:108154400-108154600	Enhancers	Fetal Heart	heart
18	chr5:108154400-108154800	Enhancers	NHEK	skin

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