Variant report

Variant	rs9885168
Chromosome Location	chr5:108148048-108148049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10038669	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10044305	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10045220	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10060694	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10062204	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10063167	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10073668	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10079165	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10477431	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13180513	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2081126	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2081129	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2081130	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28637651	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2900035	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34125469	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4604227	0.80[ASN][1000 genomes]
rs6594338	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6594340	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6874229	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6875320	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6880284	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6889550	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6891194	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6895027	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7709267	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7710482	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7712834	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7712956	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7725391	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7726708	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7731891	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7735235	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326747	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9326748	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9885082	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv471039	chr5:108133967-108245089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108124800-108149400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr5:108137600-108153000	Weak transcription	Osteobl	bone
3	chr5:108137800-108149000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr5:108138000-108153200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:108140800-108152800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:108144400-108149000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:108145400-108153000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr5:108146600-108156000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:108146800-108150000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:108146800-108183600	Weak transcription	Ovary	ovary
11	chr5:108147000-108148200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr5:108147000-108149000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr5:108147000-108150000	Weak transcription	Gastric	stomach
14	chr5:108147000-108150600	Weak transcription	Fetal Stomach	stomach
15	chr5:108147000-108153800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:108147000-108153800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:108147000-108165800	Weak transcription	Left Ventricle	heart
18	chr5:108147000-108198800	Weak transcription	Aorta	Aorta
19	chr5:108147000-108208800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:108147200-108149000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:108147400-108150000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:108147600-108154000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr5:108147800-108148800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr5:108147800-108154400	Weak transcription	NHEK	skin
25	chr5:108147800-108159200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr5:108148000-108148600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr5:108148000-108150400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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