Variant report

Variant	rs6895027
Chromosome Location	chr5:108214830-108214831
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10038669	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10044305	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs10045220	0.90[ASN][1000 genomes]
rs10060694	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10062204	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10063167	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10073668	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10079165	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1022045	0.92[JPT][hapmap]
rs10477431	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1109617	0.92[JPT][hapmap]
rs11240982	0.92[JPT][hapmap]
rs11739006	0.93[JPT][hapmap]
rs12153703	0.92[JPT][hapmap]
rs13171006	0.84[CEU][hapmap]
rs13173714	0.92[JPT][hapmap]
rs13180513	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1423457	0.93[JPT][hapmap]
rs17161476	0.92[JPT][hapmap]
rs2081126	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2081129	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2081130	0.90[EUR][1000 genomes]
rs28637651	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2900035	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34125469	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4604227	0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4957789	0.92[JPT][hapmap]
rs62360774	0.81[AMR][1000 genomes]
rs6594333	0.93[JPT][hapmap]
rs6594334	0.92[JPT][hapmap]
rs6594336	0.93[JPT][hapmap]
rs6594338	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6594340	0.81[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6871143	0.92[JPT][hapmap]
rs6871239	0.92[JPT][hapmap]
rs6872127	0.80[EUR][1000 genomes]
rs6873130	0.80[EUR][1000 genomes]
rs6874229	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6875320	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs6880284	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6889550	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6889967	0.93[JPT][hapmap]
rs6891194	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7709267	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7710482	0.85[EUR][1000 genomes]
rs7712834	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7712956	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs7716320	0.92[JPT][hapmap]
rs7716498	0.92[JPT][hapmap]
rs7725391	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7726708	0.87[EUR][1000 genomes]
rs7731891	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7735235	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9285863	0.93[JPT][hapmap]
rs9326747	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs9326748	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9885082	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9885168	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv471039	chr5:108133967-108245089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108166600-108217000	Weak transcription	Left Ventricle	heart
2	chr5:108167200-108220400	Weak transcription	Fetal Lung	lung
3	chr5:108169400-108229200	Weak transcription	Fetal Stomach	stomach
4	chr5:108173400-108239800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:108182000-108217000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:108183800-108260400	Weak transcription	Ovary	ovary
7	chr5:108194000-108217000	Weak transcription	Esophagus	oesophagus
8	chr5:108194600-108260000	Weak transcription	Fetal Intestine Large	intestine
9	chr5:108194800-108236200	Weak transcription	Hela-S3	cervix
10	chr5:108195200-108231600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:108195200-108231600	Weak transcription	Psoas Muscle	Psoas
12	chr5:108195200-108234400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr5:108196800-108230000	Weak transcription	Lung	lung
14	chr5:108197000-108268200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr5:108197400-108219800	Weak transcription	Placenta	Placenta
16	chr5:108198600-108229800	Weak transcription	Fetal Muscle Leg	muscle
17	chr5:108198600-108235000	Weak transcription	Fetal Kidney	kidney
18	chr5:108198800-108217000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr5:108199200-108271400	Weak transcription	Aorta	Aorta
20	chr5:108200200-108232600	Weak transcription	Brain Angular Gyrus	brain
21	chr5:108200200-108246400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:108202000-108229200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr5:108202200-108217200	Weak transcription	Brain Hippocampus Middle	brain
24	chr5:108203600-108220400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr5:108203800-108323400	Weak transcription	Primary B cells from cord blood	blood
26	chr5:108204400-108216800	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr5:108204400-108237800	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr5:108204600-108217000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr5:108204800-108219400	Weak transcription	HSMMtube	muscle
30	chr5:108205000-108219800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr5:108205200-108220200	Weak transcription	NH-A	brain
32	chr5:108205400-108230200	Weak transcription	Adipose Nuclei	Adipose
33	chr5:108205400-108241400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr5:108208000-108218800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr5:108208200-108268800	Weak transcription	Primary T cells from cord blood	blood
36	chr5:108209400-108230000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr5:108209600-108220200	Weak transcription	Osteobl	bone
38	chr5:108209800-108224000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr5:108209800-108229800	Weak transcription	HSMM	muscle
40	chr5:108209800-108229800	Weak transcription	NHEK	skin
41	chr5:108209800-108234000	Weak transcription	HMEC	breast
42	chr5:108209800-108234400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr5:108210200-108216800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr5:108211000-108226800	Weak transcription	Small Intestine	intestine
45	chr5:108212200-108216600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr5:108212200-108220600	Weak transcription	NHLF	lung
47	chr5:108212400-108215800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr5:108212800-108236200	Weak transcription	NHDF-Ad	bronchial
49	chr5:108213600-108220400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr5:108214200-108272200	Weak transcription	Gastric	stomach

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