Variant report

Variant	rs7735235
Chromosome Location	chr5:108146404-108146405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10038669	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10044305	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10045220	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10060694	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10062204	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10063167	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10073668	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10079165	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1022045	0.92[JPT][hapmap]
rs10477431	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1109617	0.92[JPT][hapmap]
rs11240982	0.92[JPT][hapmap]
rs11739006	0.93[JPT][hapmap]
rs12153703	0.92[JPT][hapmap]
rs13171006	0.92[CEU][hapmap]
rs13173714	0.92[JPT][hapmap]
rs13180513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1423457	0.93[JPT][hapmap]
rs17161476	0.92[JPT][hapmap]
rs2081126	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2081129	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2081130	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28637651	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28651469	0.81[EUR][1000 genomes]
rs2900035	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34125469	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4604227	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs4957789	0.92[JPT][hapmap]
rs6594333	0.93[JPT][hapmap]
rs6594334	0.92[JPT][hapmap]
rs6594336	0.93[JPT][hapmap]
rs6594338	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6594340	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6871143	0.92[JPT][hapmap]
rs6871239	0.92[JPT][hapmap]
rs6874229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6875320	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6880284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6889550	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6889967	0.93[JPT][hapmap]
rs6891194	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6895027	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7709267	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7710482	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7712834	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7712956	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7716320	0.92[JPT][hapmap]
rs7716498	0.92[JPT][hapmap]
rs7725391	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7726708	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7731891	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9285863	0.93[JPT][hapmap]
rs9326747	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9326748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9885082	0.82[ASN][1000 genomes]
rs9885168	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv471039	chr5:108133967-108245089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108124600-108146600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr5:108124800-108149400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr5:108133200-108146600	Weak transcription	Left Ventricle	heart
4	chr5:108133200-108146800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:108134600-108146600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:108137600-108153000	Weak transcription	Osteobl	bone
7	chr5:108137800-108149000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr5:108138000-108153200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:108140600-108147200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:108140800-108152800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:108142000-108146600	Weak transcription	Pancreas	Pancrea
12	chr5:108142000-108147200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr5:108144400-108149000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:108144600-108146800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
15	chr5:108145000-108147200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:108145400-108146600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
17	chr5:108145400-108146800	Strong transcription	Ovary	ovary
18	chr5:108145400-108147000	ZNF genes & repeats	Fetal Lung	lung
19	chr5:108145400-108153000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr5:108145800-108146600	ZNF genes & repeats	A549	lung
21	chr5:108145800-108146800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr5:108146000-108146800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr5:108146000-108146800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:108146000-108146800	ZNF genes & repeats	Fetal Intestine Large	intestine
25	chr5:108146000-108146800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
26	chr5:108146000-108147000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:108146000-108147000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
28	chr5:108146000-108147000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:108146000-108147000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr5:108146000-108147000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr5:108146000-108147000	ZNF genes & repeats	Fetal Intestine Small	intestine
32	chr5:108146000-108147000	ZNF genes & repeats	Fetal Stomach	stomach
33	chr5:108146000-108147000	ZNF genes & repeats	Lung	lung
34	chr5:108146000-108147800	ZNF genes & repeats	NHEK	skin
35	chr5:108146200-108147400	ZNF genes & repeats	HMEC	breast
36	chr5:108146400-108147000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:108146400-108147000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr5:108146400-108147000	ZNF genes & repeats	Aorta	Aorta
39	chr5:108146400-108147000	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
40	chr5:108146400-108147400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

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