The 2.0 version of rSNPBase

Variant report

Variant rs10045220
Chromosome Location chr5:108137962-108137963
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:108117800-108138200 Weak transcription Liver Liver
2 chr5:108120200-108142200 Weak transcription Aorta Aorta
3 chr5:108120600-108146400 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr5:108120800-108146400 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr5:108121000-108138600 Weak transcription Fetal Kidney kidney
6 chr5:108121000-108139000 Weak transcription Primary T cells from cord blood blood
7 chr5:108121000-108139200 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr5:108123000-108138200 Weak transcription Fetal Adrenal Gland Adrenal Gland
9 chr5:108123400-108138200 Weak transcription Primary B cells from peripheral blood blood
10 chr5:108123400-108139400 Weak transcription Primary T helper cells PMA-I stimulated --
11 chr5:108124000-108138800 Weak transcription Fetal Brain Male brain
12 chr5:108124000-108139200 Weak transcription Primary B cells from cord blood blood
13 chr5:108124200-108141600 Weak transcription Pancreas Pancrea
14 chr5:108124200-108141800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr5:108124200-108142800 Weak transcription Ovary ovary
16 chr5:108124400-108138200 Weak transcription Brain Angular Gyrus brain
17 chr5:108124400-108139800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr5:108124600-108146600 Weak transcription Skeletal Muscle Male skeletal muscle
19 chr5:108124800-108149400 Weak transcription Stomach Smooth Muscle stomach
20 chr5:108125200-108139200 Weak transcription Brain Hippocampus Middle brain
21 chr5:108129000-108138200 Weak transcription Placenta Placenta
22 chr5:108129000-108138600 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr5:108129400-108138200 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr5:108131400-108138600 Weak transcription Primary hematopoietic stem cells blood
25 chr5:108132200-108138600 Strong transcription Fetal Lung lung
26 chr5:108132400-108138000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr5:108132400-108139600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
28 chr5:108132800-108139200 Weak transcription Lung lung
29 chr5:108133000-108138400 Weak transcription Fetal Muscle Trunk muscle
30 chr5:108133200-108146600 Weak transcription Left Ventricle heart
31 chr5:108133200-108146800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
32 chr5:108133400-108138600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr5:108133400-108138800 Weak transcription HUES64 Cell Line embryonic stem cell
34 chr5:108133400-108141600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr5:108133600-108138200 Weak transcription Brain Anterior Caudate brain
36 chr5:108134200-108138200 Weak transcription Colonic Mucosa Colon
37 chr5:108134600-108139200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr5:108134600-108146600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr5:108135800-108138200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr5:108136200-108138000 Weak transcription Brain Germinal Matrix brain
41 chr5:108136400-108138000 Weak transcription Fetal Intestine Large intestine
42 chr5:108136400-108138000 Weak transcription Fetal Intestine Small intestine
43 chr5:108136400-108138200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr5:108136400-108139200 Weak transcription Adipose Nuclei Adipose
45 chr5:108136400-108144600 Weak transcription Brain Cingulate Gyrus brain
46 chr5:108136600-108138400 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr5:108136600-108141600 Weak transcription Fetal Stomach stomach
48 chr5:108136800-108138000 Enhancers HUVEC blood vessel
49 chr5:108136800-108138200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr5:108136800-108138200 Enhancers NHEK skin

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Last update: Aug 31, 2015