Variant report

Variant	rs6883158
Chromosome Location	chr5:43726397-43726398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10052717	1.00[AMR][1000 genomes]
rs10054154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10054206	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10058837	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10065095	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs10067068	1.00[AMR][1000 genomes]
rs10078602	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10472385	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10473317	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10473328	0.81[AFR][1000 genomes]
rs13359176	1.00[AMR][1000 genomes]
rs13360656	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs13436624	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28629332	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55721836	0.81[AFR][1000 genomes]
rs56222737	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58623090	1.00[AMR][1000 genomes]
rs59405308	1.00[AMR][1000 genomes]
rs59604594	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59661208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59750428	1.00[AMR][1000 genomes]
rs60376053	1.00[AMR][1000 genomes]
rs73751749	1.00[AMR][1000 genomes]
rs73751782	1.00[AMR][1000 genomes]
rs73751785	1.00[AMR][1000 genomes]
rs73751787	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751793	1.00[AMR][1000 genomes]
rs73751795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751798	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753610	1.00[AMR][1000 genomes]
rs73753611	1.00[AMR][1000 genomes]
rs7701080	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7702908	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7719138	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292890	1.00[AMR][1000 genomes]
rs9654395	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881017	chr5:43444826-43731692	Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	222 gene(s)	inside rSNPs	diseases
2	nsv881108	chr5:43527432-43800333	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	esv3471542	chr5:43665651-43824536	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3471543	chr5:43665767-43824443	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43725600-43730200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:43726200-43727000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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