Variant report

Variant	rs10473328
Chromosome Location	chr5:43778921-43778922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10036336	0.83[AFR][1000 genomes]
rs10042811	1.00[AMR][1000 genomes]
rs10044494	1.00[AMR][1000 genomes]
rs10052483	1.00[AMR][1000 genomes]
rs10054154	0.81[AFR][1000 genomes]
rs10058918	1.00[AMR][1000 genomes]
rs10063670	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10078602	0.85[AFR][1000 genomes]
rs10473336	1.00[AMR][1000 genomes]
rs13354103	1.00[AMR][1000 genomes]
rs13436624	0.91[AFR][1000 genomes]
rs28416791	1.00[AMR][1000 genomes]
rs4383729	1.00[AMR][1000 genomes]
rs4632802	1.00[AMR][1000 genomes]
rs55721836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58860576	1.00[AMR][1000 genomes]
rs59405308	0.85[AFR][1000 genomes]
rs59661208	0.81[AFR][1000 genomes]
rs6883158	0.81[AFR][1000 genomes]
rs73751779	1.00[AMR][1000 genomes]
rs73751795	0.81[AFR][1000 genomes]
rs73751801	0.81[AFR][1000 genomes]
rs73753637	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753641	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753643	1.00[AMR][1000 genomes]
rs73753648	1.00[AMR][1000 genomes]
rs7704177	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7734169	1.00[AMR][1000 genomes]
rs9292889	0.81[AFR][1000 genomes]
rs9292892	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292894	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881108	chr5:43527432-43800333	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv3471542	chr5:43665651-43824536	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3471543	chr5:43665767-43824443	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv537740	chr5:43729430-43782732	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43771400-43785000	Weak transcription	Fetal Stomach	stomach
2	chr5:43775800-43780400	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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