Variant report

Variant	rs10044494
Chromosome Location	chr5:43769162-43769163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10042811	1.00[AMR][1000 genomes]
rs10052483	1.00[AMR][1000 genomes]
rs10058918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10063670	1.00[AMR][1000 genomes]
rs10473328	1.00[AMR][1000 genomes]
rs10473336	1.00[AMR][1000 genomes]
rs13354103	1.00[AMR][1000 genomes]
rs28416791	1.00[AMR][1000 genomes]
rs4383729	1.00[AMR][1000 genomes]
rs4632802	1.00[AMR][1000 genomes]
rs55721836	1.00[AMR][1000 genomes]
rs58860576	1.00[AMR][1000 genomes]
rs73751779	1.00[AMR][1000 genomes]
rs73753637	1.00[AMR][1000 genomes]
rs73753641	1.00[AMR][1000 genomes]
rs73753643	1.00[AMR][1000 genomes]
rs73753648	1.00[AMR][1000 genomes]
rs7704177	1.00[AMR][1000 genomes]
rs7734169	1.00[AMR][1000 genomes]
rs9292892	1.00[AMR][1000 genomes]
rs9292894	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881108	chr5:43527432-43800333	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv3471542	chr5:43665651-43824536	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3471543	chr5:43665767-43824443	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv537740	chr5:43729430-43782732	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv275326	chr5:43762162-43775532	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43769000-43774400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:43769000-43776000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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