Variant report

Variant	rs28416791
Chromosome Location	chr5:43834234-43834235
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10042811	1.00[AMR][1000 genomes]
rs10044494	1.00[AMR][1000 genomes]
rs10052483	1.00[AMR][1000 genomes]
rs10058918	1.00[AMR][1000 genomes]
rs10063670	1.00[AMR][1000 genomes]
rs10473328	1.00[AMR][1000 genomes]
rs10473336	1.00[AMR][1000 genomes]
rs13354103	1.00[AMR][1000 genomes]
rs4383729	1.00[AMR][1000 genomes]
rs4632802	1.00[AMR][1000 genomes]
rs55721836	1.00[AMR][1000 genomes]
rs58860576	1.00[AMR][1000 genomes]
rs73753637	1.00[AMR][1000 genomes]
rs73753641	1.00[AMR][1000 genomes]
rs73753643	1.00[AMR][1000 genomes]
rs73753648	1.00[AMR][1000 genomes]
rs7704177	1.00[AMR][1000 genomes]
rs7734169	1.00[AMR][1000 genomes]
rs9292892	1.00[AMR][1000 genomes]
rs9292894	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43833600-43834400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:43833600-43834400	Enhancers	Fetal Stomach	stomach
3	chr5:43834200-43835200	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links