Variant report

Variant	rs7704177
Chromosome Location	chr5:43783104-43783105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10042811	1.00[AMR][1000 genomes]
rs10044494	1.00[AMR][1000 genomes]
rs10052483	1.00[AMR][1000 genomes]
rs10058918	1.00[AMR][1000 genomes]
rs10063670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10065095	0.85[YRI][hapmap]
rs10078602	0.81[AFR][1000 genomes]
rs10472385	1.00[YRI][hapmap]
rs10473317	1.00[YRI][hapmap]
rs10473328	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10473336	1.00[AMR][1000 genomes]
rs13354103	1.00[AMR][1000 genomes]
rs13360656	1.00[YRI][hapmap]
rs13436624	0.86[AFR][1000 genomes]
rs28416791	1.00[AMR][1000 genomes]
rs4383729	1.00[AMR][1000 genomes]
rs4632802	1.00[AMR][1000 genomes]
rs55721836	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58860576	1.00[AMR][1000 genomes]
rs59405308	0.80[AFR][1000 genomes]
rs73751779	1.00[AMR][1000 genomes]
rs73753637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753641	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753643	1.00[AMR][1000 genomes]
rs73753648	1.00[AMR][1000 genomes]
rs7701080	1.00[YRI][hapmap]
rs7719138	1.00[YRI][hapmap]
rs7734169	1.00[AMR][1000 genomes]
rs9292892	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292894	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881108	chr5:43527432-43800333	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv3471542	chr5:43665651-43824536	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3471543	chr5:43665767-43824443	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43771400-43785000	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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