Variant report

Variant	rs9292892
Chromosome Location	chr5:43774354-43774355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10042811	1.00[AMR][1000 genomes]
rs10044494	1.00[AMR][1000 genomes]
rs10052483	1.00[AMR][1000 genomes]
rs10058918	1.00[AMR][1000 genomes]
rs10063670	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10472385	0.83[YRI][hapmap]
rs10473317	0.83[YRI][hapmap]
rs10473328	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10473336	1.00[AMR][1000 genomes]
rs13354103	1.00[AMR][1000 genomes]
rs13355686	0.83[YRI][hapmap]
rs13360656	0.83[YRI][hapmap]
rs13436624	0.81[AFR][1000 genomes]
rs28416791	1.00[AMR][1000 genomes]
rs4383729	1.00[AMR][1000 genomes]
rs4632802	1.00[AMR][1000 genomes]
rs55721836	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58860576	1.00[AMR][1000 genomes]
rs59405308	0.95[AFR][1000 genomes]
rs73751779	1.00[AMR][1000 genomes]
rs73753637	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753641	1.00[AMR][1000 genomes]
rs73753643	1.00[AMR][1000 genomes]
rs73753648	1.00[AMR][1000 genomes]
rs7701080	1.00[YRI][hapmap]
rs7704177	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7719138	0.83[YRI][hapmap]
rs7734169	1.00[AMR][1000 genomes]
rs9292894	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881108	chr5:43527432-43800333	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv3471542	chr5:43665651-43824536	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3471543	chr5:43665767-43824443	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv537740	chr5:43729430-43782732	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv275326	chr5:43762162-43775532	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43769000-43774400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:43769000-43776000	Enhancers	Fetal Lung	lung
3	chr5:43770600-43774600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:43771000-43775800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:43771200-43775200	Enhancers	HMEC	breast
6	chr5:43771400-43785000	Weak transcription	Fetal Stomach	stomach
7	chr5:43771600-43774600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:43771600-43776000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:43772200-43774800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:43772400-43775000	Enhancers	HSMM	muscle
11	chr5:43772600-43774600	Enhancers	Hela-S3	cervix
12	chr5:43772600-43775000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:43772800-43774400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:43772800-43774400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:43772800-43774600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:43773000-43774400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr5:43773000-43774400	Enhancers	NHDF-Ad	bronchial
18	chr5:43773000-43774600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr5:43773200-43774600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr5:43773600-43774400	Enhancers	Osteobl	bone
21	chr5:43773600-43774800	Weak transcription	HSMMtube	muscle
22	chr5:43773800-43774400	Enhancers	Dnd41	blood
23	chr5:43773800-43774800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr5:43774000-43775000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr5:43774200-43774600	Flanking Active TSS	NHEK	skin
26	chr5:43774200-43775800	Enhancers	Placenta Amnion	Placenta Amnion

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