Variant report

Variant	rs10473336
Chromosome Location	chr5:43881446-43881447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10042811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10044494	1.00[AMR][1000 genomes]
rs10052483	1.00[AMR][1000 genomes]
rs10058918	1.00[AMR][1000 genomes]
rs10063670	1.00[AMR][1000 genomes]
rs10473328	1.00[AMR][1000 genomes]
rs13354103	1.00[AMR][1000 genomes]
rs28416791	1.00[AMR][1000 genomes]
rs4383729	1.00[AMR][1000 genomes]
rs4632802	1.00[AMR][1000 genomes]
rs55721836	1.00[AMR][1000 genomes]
rs58860576	1.00[AMR][1000 genomes]
rs73753637	1.00[AMR][1000 genomes]
rs73753641	1.00[AMR][1000 genomes]
rs73753643	1.00[AMR][1000 genomes]
rs73753648	1.00[AMR][1000 genomes]
rs7704177	1.00[AMR][1000 genomes]
rs7734169	1.00[AMR][1000 genomes]
rs9292892	1.00[AMR][1000 genomes]
rs9292894	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv965549	chr5:43877737-43886194	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43879600-43885200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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