Variant report

Variant	rs6883841
Chromosome Location	chr5:43408122-43408123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6451689	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6451690	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6866100	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6881870	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9687416	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43397400-43410200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:43397600-43409400	Weak transcription	Colonic Mucosa	Colon
3	chr5:43398000-43409000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr5:43398000-43409400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr5:43402200-43409000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr5:43402200-43409000	Weak transcription	Pancreas	Pancrea
7	chr5:43402200-43420200	Weak transcription	Gastric	stomach
8	chr5:43407200-43409400	Weak transcription	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links