Variant report

Variant	rs9687416
Chromosome Location	chr5:43401487-43401488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr5:43401485-43402480	A549	lung:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:43064153..43067001-chr5:43400205..43402124,2	K562	blood:
2	chr5:43395776..43403836-chr5:43482661..43487155,15	MCF-7	breast:
3	chr5:43399926..43401984-chr5:43482652..43484625,3	K562	blood:
4	chr5:43400613..43403183-chr5:43554881..43557703,2	MCF-7	breast:
5	chr5:43398637..43404143-chr5:43481703..43486799,11	MCF-7	breast:
6	chr5:43401279..43403730-chr5:43426630..43430276,3	MCF-7	breast:
7	chr5:43064153..43066269-chr5:43399362..43401705,2	K562	blood:
8	chr5:43401145..43403362-chr5:43418703..43420917,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
CCL28	TF binding region
ENSG00000249492	Chromatin interaction
ENSG00000172262	Chromatin interaction
ENSG00000172239	Chromatin interaction
ENSG00000151881	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6451689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6451690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6866100	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6877388	0.90[AFR][1000 genomes]
rs6881870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6883841	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6890108	0.85[AFR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43397000-43404000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:43397400-43402000	Weak transcription	Gastric	stomach
3	chr5:43397400-43402800	Weak transcription	Stomach Mucosa	stomach
4	chr5:43397400-43410200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:43397600-43402000	Weak transcription	Pancreas	Pancrea
6	chr5:43397600-43402000	Weak transcription	A549	lung
7	chr5:43397600-43409400	Weak transcription	Colonic Mucosa	Colon
8	chr5:43398000-43409000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr5:43398000-43409400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr5:43400600-43401600	Weak transcription	HepG2	liver
11	chr5:43401200-43402200	Strong transcription	Duodenum Mucosa	Duodenum
12	chr5:43401400-43402200	Enhancers	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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