Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10059646	0.92[ASN][1000 genomes]
rs11743137	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11750495	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12659748	0.88[EUR][1000 genomes]
rs12659794	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12719094	0.87[EUR][1000 genomes]
rs28575060	0.93[EUR][1000 genomes]
rs34185682	0.81[ASN][1000 genomes]
rs4957773	0.85[EUR][1000 genomes]
rs6594324	0.90[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs6868253	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6868946	0.80[ASN][1000 genomes]
rs6874207	0.84[EUR][1000 genomes]
rs6874599	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6879959	0.92[ASN][1000 genomes]
rs6882710	0.90[EUR][1000 genomes]
rs6885821	0.95[ASN][1000 genomes]
rs6889809	0.95[ASN][1000 genomes]
rs6891379	0.87[EUR][1000 genomes]
rs6891578	0.86[EUR][1000 genomes]
rs7443716	0.91[ASN][1000 genomes]
rs7443963	0.87[ASN][1000 genomes]
rs7444986	0.85[ASN][1000 genomes]
rs7447988	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1019409	chr5:107934028-107991426	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107954400-107971400	Weak transcription	H9 Cell Line	embryonic stem cell

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