Variant report

Variant	rs6882710
Chromosome Location	chr5:107950795-107950796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11240978	0.90[ASN][1000 genomes]
rs12652136	0.91[ASN][1000 genomes]
rs12719093	0.86[ASN][1000 genomes]
rs12719094	0.80[EUR][1000 genomes]
rs28575060	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957773	0.81[EUR][1000 genomes]
rs6594322	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6594325	0.80[ASN][1000 genomes]
rs6884839	0.90[EUR][1000 genomes]
rs6891379	0.80[EUR][1000 genomes]
rs6893488	0.88[ASN][1000 genomes]
rs6894226	0.84[ASN][1000 genomes]
rs7448620	0.93[ASN][1000 genomes]
rs7449365	0.92[ASN][1000 genomes]
rs7717818	0.88[ASN][1000 genomes]
rs7732248	0.90[ASN][1000 genomes]
rs9885274	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1019409	chr5:107934028-107991426	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107949000-107954000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:107949000-107958600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:107949600-107954200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:107950200-107950800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:107950600-107951600	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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