Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10059646	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10455022	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11240978	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12652136	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12719093	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28575060	0.92[ASN][1000 genomes]
rs4957774	0.80[EUR][1000 genomes]
rs6594322	0.87[ASN][1000 genomes]
rs6594324	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6594325	0.83[ASN][1000 genomes]
rs6879959	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6882710	0.92[ASN][1000 genomes]
rs6885821	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6889809	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6893488	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6894226	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7443716	0.82[EUR][1000 genomes]
rs7443963	0.86[EUR][1000 genomes]
rs7444986	0.85[EUR][1000 genomes]
rs7448620	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7717818	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7732248	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9326741	0.80[EUR][1000 genomes]
rs9885274	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1019409	chr5:107934028-107991426	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107949000-107954000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:107949000-107958600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:107949600-107954200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:107953000-107954600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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