Variant report

Variant	rs10455022
Chromosome Location	chr5:107956202-107956203
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10039038	0.92[ASN][1000 genomes]
rs10059592	0.83[ASN][1000 genomes]
rs10067514	0.83[ASN][1000 genomes]
rs10477923	0.87[ASN][1000 genomes]
rs11240978	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11743137	0.91[ASN][1000 genomes]
rs11750495	0.91[ASN][1000 genomes]
rs12187579	0.85[ASN][1000 genomes]
rs12188393	0.85[ASN][1000 genomes]
rs12652136	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12659748	0.91[ASN][1000 genomes]
rs12659794	0.91[ASN][1000 genomes]
rs12719093	0.82[AMR][1000 genomes]
rs12719094	0.91[ASN][1000 genomes]
rs13174109	0.89[ASN][1000 genomes]
rs13355015	0.83[ASN][1000 genomes]
rs34119838	0.92[ASN][1000 genomes]
rs4957773	0.93[ASN][1000 genomes]
rs4957774	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6594325	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6868253	0.92[ASN][1000 genomes]
rs6874207	0.94[ASN][1000 genomes]
rs6874599	0.91[ASN][1000 genomes]
rs6882568	0.92[ASN][1000 genomes]
rs6891379	0.93[ASN][1000 genomes]
rs6891578	0.93[ASN][1000 genomes]
rs6893488	0.86[AMR][1000 genomes]
rs7444713	0.92[ASN][1000 genomes]
rs7444915	0.92[ASN][1000 genomes]
rs7446944	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7446990	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7447988	0.89[ASN][1000 genomes]
rs7448547	0.83[ASN][1000 genomes]
rs7448620	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7449365	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7710806	0.91[ASN][1000 genomes]
rs7717818	0.86[AMR][1000 genomes]
rs7717967	0.83[ASN][1000 genomes]
rs7725827	0.93[ASN][1000 genomes]
rs7732248	0.83[AMR][1000 genomes]
rs7737879	0.83[ASN][1000 genomes]
rs9326740	0.85[ASN][1000 genomes]
rs9326741	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1019409	chr5:107934028-107991426	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107949000-107958600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:107953600-107956600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:107954000-107956600	Weak transcription	Placenta	Placenta
4	chr5:107954400-107971400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:107954600-107956800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:107956200-107956600	Active TSS	Duodenum Mucosa	Duodenum
7	chr5:107956200-107957000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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