Variant report

Variant	rs10059592
Chromosome Location	chr5:107942536-107942537
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107938341..107940376-chr5:107941040..107943245,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10039038	0.88[ASN][1000 genomes]
rs10067514	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10455022	0.83[ASN][1000 genomes]
rs10477923	0.83[ASN][1000 genomes]
rs11743137	0.87[ASN][1000 genomes]
rs11750495	0.87[ASN][1000 genomes]
rs12187579	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12188393	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12659748	0.87[ASN][1000 genomes]
rs12659794	0.87[ASN][1000 genomes]
rs12719094	0.87[ASN][1000 genomes]
rs13174109	0.88[ASN][1000 genomes]
rs13355015	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34119838	0.88[ASN][1000 genomes]
rs4957773	0.88[ASN][1000 genomes]
rs4957774	0.82[ASN][1000 genomes]
rs6868253	0.88[ASN][1000 genomes]
rs6874207	0.84[ASN][1000 genomes]
rs6874599	0.87[ASN][1000 genomes]
rs6882568	0.88[ASN][1000 genomes]
rs6891379	0.88[ASN][1000 genomes]
rs6891578	0.88[ASN][1000 genomes]
rs7444713	0.88[ASN][1000 genomes]
rs7444915	0.84[ASN][1000 genomes]
rs7446944	0.82[ASN][1000 genomes]
rs7446990	0.83[ASN][1000 genomes]
rs7447988	0.84[ASN][1000 genomes]
rs7448547	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7710806	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7717967	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7725827	0.88[ASN][1000 genomes]
rs7737879	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9326740	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9326741	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1019409	chr5:107934028-107991426	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107938800-107948400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:107941600-107942600	Enhancers	Dnd41	blood

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