Variant report

Variant	rs7444915
Chromosome Location	chr5:107973849-107973850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107965170..107967420-chr5:107972651..107975039,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10039038	0.94[ASN][1000 genomes]
rs10059592	0.84[ASN][1000 genomes]
rs10067514	0.84[ASN][1000 genomes]
rs10455022	0.92[ASN][1000 genomes]
rs10477923	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11743137	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11750495	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12187579	0.86[ASN][1000 genomes]
rs12188393	0.86[ASN][1000 genomes]
rs12657101	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12659748	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12659794	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12719094	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13174109	0.92[ASN][1000 genomes]
rs13355015	0.84[ASN][1000 genomes]
rs34119838	0.94[ASN][1000 genomes]
rs4957773	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4957774	0.93[ASN][1000 genomes]
rs6868253	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6874207	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6874599	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6882568	0.94[ASN][1000 genomes]
rs6891379	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6891578	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7444350	0.84[ASN][1000 genomes]
rs7444713	0.94[ASN][1000 genomes]
rs7446944	0.87[ASN][1000 genomes]
rs7446990	0.90[ASN][1000 genomes]
rs7447988	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7448547	0.84[ASN][1000 genomes]
rs7710806	0.93[ASN][1000 genomes]
rs7717967	0.84[ASN][1000 genomes]
rs7725827	0.95[ASN][1000 genomes]
rs7737879	0.84[ASN][1000 genomes]
rs9326740	0.86[ASN][1000 genomes]
rs9326741	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1019409	chr5:107934028-107991426	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107970200-107977800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:107970600-107977800	Weak transcription	Osteobl	bone
3	chr5:107970800-107974800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:107972200-107974000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:107972200-107974000	Enhancers	NHDF-Ad	bronchial
6	chr5:107972600-107977400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:107972600-107977600	Weak transcription	GM12878-XiMat	blood
8	chr5:107972800-107974000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:107973000-107975000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:107973400-107975200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:107973400-107976400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:107973600-107975000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:107973600-107977400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:107973600-107977400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:107973600-107977800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:107973600-107977800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:107973600-107977800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:107973600-107977800	Weak transcription	HMEC	breast
19	chr5:107973800-107977800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links