Variant report

Variant	rs6594325
Chromosome Location	chr5:107969691-107969692
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10455022	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12652136	0.81[ASN][1000 genomes]
rs12657101	0.82[ASN][1000 genomes]
rs28575060	0.80[ASN][1000 genomes]
rs4957774	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6594324	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs6882710	0.80[ASN][1000 genomes]
rs6885821	0.80[EUR][1000 genomes]
rs6889809	0.80[EUR][1000 genomes]
rs7443716	0.84[EUR][1000 genomes]
rs7446944	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7446990	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7448620	0.83[ASN][1000 genomes]
rs7449365	0.83[ASN][1000 genomes]
rs7732248	0.80[ASN][1000 genomes]
rs9326741	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1019409	chr5:107934028-107991426	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107954400-107971400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:107966000-107971400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:107966000-107971600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:107969200-107971000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:107969200-107971800	Enhancers	NHDF-Ad	bronchial
6	chr5:107969400-107970000	Enhancers	Aorta	Aorta
7	chr5:107969600-107970000	Enhancers	Fetal Stomach	stomach
8	chr5:107969600-107970800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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