Variant report

Variant	rs6886340
Chromosome Location	chr5:116497697-116497698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56892707	1.00[AMR][1000 genomes]
rs73264702	1.00[AMR][1000 genomes]
rs73266746	1.00[AMR][1000 genomes]
rs73266786	1.00[AMR][1000 genomes]
rs7713755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752839	chr5:116461101-116504101	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116494400-116501200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:116496000-116498200	Enhancers	Fetal Lung	lung
3	chr5:116497000-116497800	Enhancers	Adipose Nuclei	Adipose
4	chr5:116497400-116497800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr5:116497400-116497800	Enhancers	Brain Anterior Caudate	brain
6	chr5:116497400-116497800	Enhancers	Fetal Kidney	kidney
7	chr5:116497400-116497800	Enhancers	Fetal Muscle Leg	muscle
8	chr5:116497400-116498000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:116497400-116498000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:116497400-116498000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:116497400-116498000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:116497400-116498000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr5:116497400-116498000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr5:116497400-116498000	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr5:116497400-116498000	Enhancers	Left Ventricle	heart
16	chr5:116497400-116498200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:116497400-116498200	Enhancers	Brain Hippocampus Middle	brain
18	chr5:116497400-116498400	Enhancers	Brain Substantia Nigra	brain
19	chr5:116497600-116497800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr5:116497600-116498000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:116497600-116498000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr5:116497600-116498000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:116497600-116498200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:116497600-116498200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr5:116497600-116498200	Enhancers	Brain Cingulate Gyrus	brain

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