Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1503926	0.82[EUR][1000 genomes]
rs17146582	0.90[AFR][1000 genomes]
rs17146596	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17146610	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17146612	1.00[EUR][1000 genomes]
rs17146625	0.93[EUR][1000 genomes]
rs1835869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60019001	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60263195	0.93[EUR][1000 genomes]
rs6595230	1.00[EUR][1000 genomes]
rs6595231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6891906	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73783447	0.93[EUR][1000 genomes]
rs73784933	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784935	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73784937	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73784938	1.00[EUR][1000 genomes]
rs73785926	0.93[EUR][1000 genomes]
rs73785931	0.93[EUR][1000 genomes]
rs73785936	0.93[EUR][1000 genomes]
rs73785937	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73785938	0.93[EUR][1000 genomes]
rs7712011	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1018955	chr5:119679918-119802014	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1020655	chr5:119729801-119781762	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119735400-119740600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:119735800-119744600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:119736400-119740200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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