Variant report
| Variant | rs6891906 |
|---|---|
| Chromosome Location | chr5:119751664-119751665 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:119721254..119725042-chr5:119751252..119754462,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1503926 | 0.82[EUR][1000 genomes] |
| rs17146550 | 0.88[AFR][1000 genomes] |
| rs17146596 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17146610 | 1.00[EUR][1000 genomes] |
| rs17146612 | 1.00[EUR][1000 genomes] |
| rs17146625 | 0.93[EUR][1000 genomes] |
| rs1835869 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60019001 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60146521 | 0.92[AFR][1000 genomes] |
| rs60263195 | 0.93[EUR][1000 genomes] |
| rs61629516 | 0.92[AFR][1000 genomes] |
| rs6595226 | 0.93[AFR][1000 genomes] |
| rs6595227 | 0.93[AFR][1000 genomes] |
| rs6595230 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6595231 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6887795 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73783447 | 0.93[EUR][1000 genomes] |
| rs73784933 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73784935 | 0.89[AMR][1000 genomes] |
| rs73784937 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73784938 | 1.00[EUR][1000 genomes] |
| rs73785926 | 0.93[EUR][1000 genomes] |
| rs73785931 | 0.93[EUR][1000 genomes] |
| rs73785936 | 0.93[EUR][1000 genomes] |
| rs73785937 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73785938 | 0.93[EUR][1000 genomes] |
| rs7712011 | 1.00[EUR][1000 genomes] |
| rs7736729 | 0.93[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532200 | chr5:119317901-120102513 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018955 | chr5:119679918-119802014 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1020655 | chr5:119729801-119781762 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1018100 | chr5:119749898-119802014 | Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:119742000-119775000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr5:119751200-119752000 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 3 | chr5:119751600-119754800 | Weak transcription | Primary hematopoietic stem cells | blood |
