Variant report

Variant	rs6889062
Chromosome Location	chr5:94084404-94084405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13188252	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2161242	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2636	0.89[YRI][hapmap]
rs2638	0.85[YRI][hapmap]
rs395097	0.85[CEU][hapmap]
rs6874244	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6877393	1.00[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6885036	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711363	0.85[CEU][hapmap];0.96[MKK][hapmap];0.95[YRI][hapmap]
rs7735924	0.85[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6889062	MCTP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94072600-94086200	Weak transcription	Spleen	Spleen
2	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:94080800-94085000	Enhancers	Hela-S3	cervix
4	chr5:94081800-94084800	Enhancers	Primary hematopoietic stem cells	blood
5	chr5:94081800-94085200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:94082200-94084800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr5:94082400-94086200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:94082600-94085000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr5:94082800-94086400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:94083000-94084600	Enhancers	GM12878-XiMat	blood
11	chr5:94083000-94088000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr5:94083000-94108000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr5:94083000-94125800	Weak transcription	HUVEC	blood vessel
14	chr5:94083600-94085000	Enhancers	Thymus	Thymus
15	chr5:94083800-94084800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:94084200-94085400	Weak transcription	Fetal Heart	heart
17	chr5:94084400-94085000	Genic enhancers	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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