Variant report

Variant	rs7711363
Chromosome Location	chr5:94069109-94069110
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2636	0.89[YRI][hapmap]
rs2638	0.90[YRI][hapmap]
rs395097	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs449798	0.88[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.81[EUR][1000 genomes]
rs6889062	0.85[CEU][hapmap];0.96[MKK][hapmap];0.95[YRI][hapmap]
rs7735924	0.90[YRI][hapmap]
rs845726	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882387	chr5:94001476-94071404	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7711363	MCTP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94048600-94071600	Weak transcription	Lung	lung
2	chr5:94048600-94081400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:94049400-94081400	Weak transcription	HUVEC	blood vessel
4	chr5:94049800-94077600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:94052400-94079600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:94067000-94070600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr5:94067000-94080600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr5:94067800-94069200	Strong transcription	Fetal Thymus	thymus
9	chr5:94069000-94069200	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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