Variant report

Variant	rs6890085
Chromosome Location	chr5:95008736-95008737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:95008237..95008942-chr5:95064022..95064673,4	MCF-7	breast:
2	chr5:95005377..95009942-chr5:95032567..95034719,5	MCF-7	breast:
3	chr5:95007940..95008942-chr5:95064022..95064883,7	MCF-7	breast:
4	chr5:95008173..95008827-chr5:95034001..95034617,3	MCF-7	breast:
5	chr5:94977116..95012475-chr5:95055682..95079552,215	K562	blood:
6	chr5:95007830..95008774-chr5:95064191..95064691,2	MCF-7	breast:
7	chr5:95005419..95015076-chr5:95065455..95072981,19	MCF-7	breast:
8	chr5:94980512..95018354-chr5:95057997..95080764,228	K562	blood:
9	chr5:95007969..95008827-chr5:95033397..95034617,6	MCF-7	breast:
10	chr5:95008668..95011656-chr5:95017119..95019172,2	MCF-7	breast:
11	chr5:95006472..95010092-chr5:95070112..95072894,3	MCF-7	breast:
12	chr5:95006484..95009767-chr5:95065115..95069672,5	MCF-7	breast:
13	chr5:95006572..95009487-chr5:95081876..95084806,3	K562	blood:
14	chr5:95007000..95009059-chr5:95032542..95035074,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164292	Chromatin interaction
ENSG00000250240	Chromatin interaction
ENSG00000145757	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17084946	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17084956	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs34297786	0.96[EUR][1000 genomes]
rs59387574	0.96[EUR][1000 genomes]
rs6892026	0.88[EUR][1000 genomes]
rs6899234	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs72781498	0.91[EUR][1000 genomes]
rs7733834	0.91[EUR][1000 genomes]
rs7733871	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95005000-95010400	Enhancers	Placenta	Placenta
2	chr5:95005800-95009800	Weak transcription	Aorta	Aorta
3	chr5:95006000-95009800	Enhancers	HepG2	liver
4	chr5:95006000-95015000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:95006600-95008800	Weak transcription	Fetal Muscle Leg	muscle
6	chr5:95006600-95008800	Weak transcription	Ovary	ovary
7	chr5:95006600-95009000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:95006600-95010000	Weak transcription	Psoas Muscle	Psoas
9	chr5:95006800-95009200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:95007600-95008800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr5:95007600-95009200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:95007800-95009000	Enhancers	Hela-S3	cervix
13	chr5:95007800-95009200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:95007800-95009200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:95007800-95009200	Enhancers	Adipose Nuclei	Adipose
16	chr5:95007800-95009200	Enhancers	Liver	Liver
17	chr5:95007800-95009200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr5:95007800-95009200	Enhancers	K562	blood
19	chr5:95007800-95009400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:95008000-95008800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:95008400-95009000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr5:95008400-95009200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:95008400-95009600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr5:95008400-95010000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr5:95008600-95008800	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr5:95008600-95009200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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