Variant report

Variant	rs7733871
Chromosome Location	chr5:95021697-95021698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:95021571-95021700	MCF-7	breast:	n/a	n/a
2	POLR2A	chr5:95020732-95025150	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95017140..95019348-chr5:95020863..95022386,2	K562	blood:
2	chr5:95019652..95023120-chr5:95065412..95068394,3	K562	blood:
3	chr5:95021448..95024081-chr5:95035363..95040097,4	K562	blood:
4	chr5:95021327..95022840-chr5:95031352..95033975,2	MCF-7	breast:
5	chr5:95019814..95022231-chr5:95105076..95107925,2	K562	blood:
6	chr5:95019165..95021725-chr5:95024391..95026256,2	K562	blood:
7	chr5:95021502..95023409-chr5:95054349..95057566,3	K562	blood:

No data

No data

No data

Variant related genes	Relation type
SPATA9	TF binding region
ENSG00000164292	Chromatin interaction
ENSG00000250240	Chromatin interaction
ENSG00000145757	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17084946	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17084956	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34297786	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59387574	0.87[EUR][1000 genomes]
rs6890085	0.91[EUR][1000 genomes]
rs6892026	0.80[EUR][1000 genomes]
rs6899234	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72781498	0.83[EUR][1000 genomes]
rs7733834	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95009200-95032400	Weak transcription	Adipose Nuclei	Adipose
2	chr5:95015000-95040400	Weak transcription	HSMMtube	muscle
3	chr5:95017600-95039800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:95018800-95022200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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