Variant report

Variant	rs6890737
Chromosome Location	chr5:107472935-107472936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10071678	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10479428	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13354786	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1946209	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28469876	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6873810	0.91[AFR][1000 genomes]
rs73210815	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73210820	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9328029	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107468600-107475000	Weak transcription	Aorta	Aorta
3	chr5:107470600-107475000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:107471000-107477400	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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