Variant report

Variant	rs73210815
Chromosome Location	chr5:107479526-107479527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10071678	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10479428	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13354786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1946209	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28469876	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6873810	0.94[AFR][1000 genomes]
rs6890737	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73210820	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9328029	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107474600-107511000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107475000-107482400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr5:107475200-107527400	Weak transcription	Liver	Liver
5	chr5:107475800-107510400	Weak transcription	Fetal Intestine Small	intestine
6	chr5:107476000-107535600	Weak transcription	Left Ventricle	heart
7	chr5:107477600-107486000	Weak transcription	Psoas Muscle	Psoas
8	chr5:107478800-107480000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:107478800-107488400	Weak transcription	Fetal Lung	lung
10	chr5:107479000-107479600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:107479000-107480000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:107479200-107480000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:107479200-107480000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:107479200-107480000	Enhancers	A549	lung
15	chr5:107479400-107486000	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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