Variant report

Variant	rs6892175
Chromosome Location	chr5:112004396-112004397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11951744	1.00[AMR][1000 genomes]
rs17134903	1.00[AMR][1000 genomes]
rs6874953	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6882890	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs6895054	1.00[AMR][1000 genomes]
rs7724741	1.00[AMR][1000 genomes]
rs7731851	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112000800-112004800	Weak transcription	Brain Substantia Nigra	brain
2	chr5:112001000-112004800	Weak transcription	Brain Anterior Caudate	brain
3	chr5:112001000-112004800	Weak transcription	Brain Hippocampus Middle	brain
4	chr5:112001200-112004600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:112003800-112004800	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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