Variant report

Variant	rs6895054
Chromosome Location	chr5:112045532-112045533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112044064..112046268-chr5:112246769..112248546,2	K562	blood:
2	chr5:112041577..112049243-chr5:112069735..112074802,8	K562	blood:
3	chr5:111887498..111890102-chr5:112044744..112046649,2	MCF-7	breast:
4	chr5:112041486..112046402-chr5:112068342..112076365,12	K562	blood:

Variant related genes	Relation type
ENSG00000134982	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11951744	1.00[AMR][1000 genomes]
rs17134903	1.00[AMR][1000 genomes]
rs6874953	1.00[AMR][1000 genomes]
rs6882890	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6892175	1.00[AMR][1000 genomes]
rs7703109	1.00[AMR][1000 genomes]
rs7724741	1.00[AMR][1000 genomes]
rs7731851	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112042600-112046200	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr5:112042800-112045800	Active TSS	Brain Cingulate Gyrus	brain
3	chr5:112043000-112045600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:112043000-112045600	Active TSS	HSMM	muscle
5	chr5:112043000-112045800	Active TSS	HSMMtube	muscle
6	chr5:112043000-112046000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:112043000-112048200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:112044200-112045600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:112044200-112046600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:112044200-112046600	Weak transcription	Gastric	stomach
11	chr5:112044200-112047000	Enhancers	Primary B cells from peripheral blood	blood
12	chr5:112044200-112049400	Weak transcription	Esophagus	oesophagus
13	chr5:112044400-112045600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:112044400-112045800	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr5:112044400-112046000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr5:112044400-112046200	Enhancers	Stomach Mucosa	stomach
17	chr5:112044400-112046800	Enhancers	Spleen	Spleen
18	chr5:112044400-112047000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr5:112044400-112049200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr5:112044400-112049800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr5:112044600-112045600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr5:112044600-112045800	Enhancers	Liver	Liver
23	chr5:112044600-112048000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr5:112044800-112045600	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr5:112044800-112045600	Enhancers	Rectal Smooth Muscle	rectum
26	chr5:112044800-112045600	Enhancers	HMEC	breast
27	chr5:112044800-112045800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr5:112044800-112046000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:112044800-112046000	Enhancers	Adipose Nuclei	Adipose
30	chr5:112044800-112046000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr5:112044800-112046000	Enhancers	Fetal Kidney	kidney
32	chr5:112044800-112046200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr5:112044800-112046200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr5:112044800-112046200	Enhancers	Fetal Stomach	stomach
35	chr5:112044800-112046400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr5:112044800-112046800	Weak transcription	Brain Substantia Nigra	brain
37	chr5:112044800-112046800	Enhancers	Fetal Lung	lung
38	chr5:112044800-112047400	Enhancers	Primary T cells fromperipheralblood	blood
39	chr5:112044800-112047400	Enhancers	Fetal Thymus	thymus
40	chr5:112044800-112047400	Enhancers	Thymus	Thymus
41	chr5:112044800-112047600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr5:112044800-112047800	Enhancers	Brain Angular Gyrus	brain
43	chr5:112044800-112049400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr5:112044800-112050200	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr5:112044800-112052200	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr5:112044800-112058000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr5:112044800-112058800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr5:112045000-112045600	Enhancers	Left Ventricle	heart
49	chr5:112045000-112045600	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr5:112045000-112045600	Enhancers	Right Atrium	heart

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