Variant report

Variant	rs6892707
Chromosome Location	chr5:179597558-179597559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1867458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867459	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6877947	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030437	chr5:179235423-179649944	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	189 gene(s)	inside rSNPs	diseases
2	nsv537982	chr5:179235423-179649944	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	189 gene(s)	inside rSNPs	diseases
3	nsv948909	chr5:179249099-179772640	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
4	nsv1033706	chr5:179402769-179806356	Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
5	esv2758032	chr5:179534477-179729944	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv2759398	chr5:179534477-179729944	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv883288	chr5:179537727-179608656	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1030036	chr5:179543546-179610871	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv830562	chr5:179555313-179622441	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179595600-179597600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:179595600-179597800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:179595800-179600000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:179596000-179598200	Enhancers	Fetal Stomach	stomach
5	chr5:179596200-179597600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:179596200-179597800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:179596200-179598400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:179596200-179598400	Enhancers	Primary hematopoietic stem cells	blood
9	chr5:179596400-179597800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:179596400-179598000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr5:179596400-179602200	Enhancers	Fetal Brain Male	brain
12	chr5:179596800-179597600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
13	chr5:179596800-179597600	Enhancers	Fetal Lung	lung
14	chr5:179596800-179597800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:179596800-179597800	Enhancers	Ovary	ovary
16	chr5:179596800-179598600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:179596800-179600200	Enhancers	Fetal Heart	heart
18	chr5:179596800-179602400	Enhancers	Placenta	Placenta
19	chr5:179596800-179604000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:179597000-179597600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:179597000-179597600	Flanking Active TSS	Brain Cingulate Gyrus	brain
22	chr5:179597000-179597600	Flanking Active TSS	Brain Germinal Matrix	brain
23	chr5:179597000-179597600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
24	chr5:179597000-179597800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr5:179597000-179598000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:179597000-179598200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
27	chr5:179597000-179601600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr5:179597200-179597600	Active TSS	Brain Anterior Caudate	brain
29	chr5:179597200-179597600	Active TSS	Brain Hippocampus Middle	brain
30	chr5:179597200-179597800	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr5:179597200-179598200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
32	chr5:179597200-179600000	Enhancers	Right Ventricle	heart
33	chr5:179597200-179601800	Enhancers	Brain Angular Gyrus	brain
34	chr5:179597200-179602800	Weak transcription	Right Atrium	heart
35	chr5:179597400-179597600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:179597400-179597600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr5:179597400-179597600	Enhancers	Fetal Brain Female	brain
38	chr5:179597400-179597600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
39	chr5:179597400-179597600	Flanking Active TSS	HSMMtube	muscle
40	chr5:179597400-179597800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr5:179597400-179597800	Bivalent Enhancer	Lung	lung
42	chr5:179597400-179598600	Weak transcription	Left Ventricle	heart
43	chr5:179597400-179599200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr5:179597400-179602000	Enhancers	Brain Substantia Nigra	brain
45	chr5:179597400-179607600	Weak transcription	Gastric	stomach
46	chr5:179597400-179608800	Enhancers	Fetal Muscle Leg	muscle

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