Variant report

Variant	rs6892871
Chromosome Location	chr5:36669569-36669570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36666970..36669597-chr5:36688949..36691021,2	MCF-7	breast:
2	chr5:36660518..36663244-chr5:36667179..36669676,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1001571	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10080178	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.94[ASN][1000 genomes]
rs2301064	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.94[ASN][1000 genomes]
rs3753180	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59385748	1.00[EUR][1000 genomes]
rs73089416	1.00[EUR][1000 genomes]
rs7731495	1.00[EUR][1000 genomes]
rs9283743	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv969921	chr5:36645147-36696229	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36655400-36684200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:36655400-36690000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:36655800-36671200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:36655800-36671400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:36656000-36670800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:36656000-36673800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:36656600-36670800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:36658200-36690000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:36658600-36670800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:36658600-36684000	Weak transcription	Esophagus	oesophagus
11	chr5:36658800-36671000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:36659000-36671000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr5:36659000-36671400	Weak transcription	Adipose Nuclei	Adipose
14	chr5:36659000-36689400	Weak transcription	Osteobl	bone
15	chr5:36659400-36683400	Weak transcription	NHDF-Ad	bronchial
16	chr5:36662000-36690000	Weak transcription	Psoas Muscle	Psoas
17	chr5:36662600-36670800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr5:36663000-36669600	Enhancers	Brain Cingulate Gyrus	brain
19	chr5:36663000-36669600	Enhancers	Brain Hippocampus Middle	brain
20	chr5:36663000-36689600	Weak transcription	Fetal Brain Female	brain
21	chr5:36663600-36671800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr5:36664800-36669600	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr5:36665600-36672600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr5:36666000-36690000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr5:36666400-36670800	Weak transcription	Fetal Muscle Leg	muscle
26	chr5:36667000-36669800	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr5:36667400-36688200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr5:36667600-36672400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr5:36667600-36689200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr5:36668200-36671400	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr5:36668200-36672400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr5:36668200-36677000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:36668200-36679800	Weak transcription	Fetal Lung	lung
34	chr5:36668200-36690000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr5:36668400-36669600	Enhancers	Right Atrium	heart
36	chr5:36668400-36671000	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr5:36668400-36672200	Weak transcription	HMEC	breast
38	chr5:36668400-36685000	Weak transcription	Fetal Intestine Large	intestine
39	chr5:36668400-36689200	Weak transcription	NHEK	skin
40	chr5:36668600-36670800	Weak transcription	Placenta	Placenta
41	chr5:36668600-36671000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:36668600-36671000	Weak transcription	HSMM	muscle
43	chr5:36668600-36672400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr5:36668600-36690000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr5:36668800-36669600	Flanking Active TSS	Fetal Heart	heart
46	chr5:36668800-36669800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr5:36668800-36679600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr5:36669000-36669600	Enhancers	Left Ventricle	heart
49	chr5:36669000-36669600	Enhancers	Right Ventricle	heart
50	chr5:36669000-36671400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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