The 2.0 version of rSNPBase

Variant report

Variant rs689465
Chromosome Location chr1:186650846-186650847
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:186646400-186651000 Active TSS Breast Myoepithelial Primary Cells Breast
2 chr1:186647000-186652000 Active TSS Stomach Smooth Muscle stomach
3 chr1:186647600-186651000 Active TSS A549 lung
4 chr1:186647800-186651800 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
5 chr1:186648000-186651200 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr1:186648000-186651600 Active TSS Rectal Mucosa Donor 29 rectum
7 chr1:186648000-186651800 Active TSS Colon Smooth Muscle Colon
8 chr1:186648000-186651800 Active TSS NHDF-Ad bronchial
9 chr1:186648200-186651000 Active TSS Fetal Stomach stomach
10 chr1:186648200-186651000 Active TSS Osteobl bone
11 chr1:186648200-186651200 Active TSS NH-A brain
12 chr1:186648400-186651000 Active TSS Brain Dorsolateral Prefrontal Cortex brain
13 chr1:186648400-186652000 Active TSS Right Atrium heart
14 chr1:186648600-186651000 Active TSS Pancreatic Islets Pancreatic Islet
15 chr1:186648600-186651200 Active TSS Hela-S3 cervix
16 chr1:186648600-186651400 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr1:186648600-186651400 Active TSS NHLF lung
18 chr1:186648600-186651600 Active TSS HMEC breast
19 chr1:186648600-186651800 Active TSS Rectal Smooth Muscle rectum
20 chr1:186648600-186652000 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr1:186648600-186652000 Active TSS Duodenum Smooth Muscle Duodenum
22 chr1:186648600-186652400 Active TSS NHEK skin
23 chr1:186649200-186651200 Active TSS Aorta Aorta
24 chr1:186649200-186652400 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:186650200-186651000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr1:186650200-186652200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr1:186650400-186651000 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells blood
28 chr1:186650400-186651600 Active TSS Brain Inferior Temporal Lobe brain
29 chr1:186650400-186652000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr1:186650600-186651000 Bivalent Enhancer iPS-15b Cell Line embryonic stem cell
31 chr1:186650600-186651600 Weak transcription Adipose Nuclei Adipose
32 chr1:186650600-186651800 Enhancers Primary monocytes fromperipheralblood blood
33 chr1:186650600-186652000 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:186650600-186652200 Enhancers Primary neutrophils fromperipheralblood blood
35 chr1:186650800-186651000 Enhancers Primary hematopoietic stem cells short term culture blood
36 chr1:186650800-186651000 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:186650800-186651000 Enhancers Fetal Kidney kidney
38 chr1:186650800-186651000 Enhancers Fetal Lung lung
39 chr1:186650800-186651200 Active TSS Fetal Intestine Large intestine
40 chr1:186650800-186651600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr1:186650800-186652000 Flanking Active TSS HUVEC blood vessel
42 chr1:186650800-186652000 Enhancers Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015