Variant report

Variant	rs6895146
Chromosome Location	chr5:95418381-95418382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95417552..95419052-chr5:95421414..95423793,2	MCF-7	breast:
2	chr5:95416575..95419199-chr5:95425271..95427989,2	K562	blood:
3	chr5:95296726..95298627-chr5:95417154..95418671,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118985	Chromatin interaction
ENSG00000251314	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10056771	0.80[CEU][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10079268	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10085034	0.81[CEU][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11740207	0.86[EUR][1000 genomes]
rs11949461	0.86[EUR][1000 genomes]
rs11951463	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11956456	0.86[EUR][1000 genomes]
rs11960219	0.86[EUR][1000 genomes]
rs13155375	0.81[CEU][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13172783	0.81[CEU][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13186419	0.87[EUR][1000 genomes]
rs1389827	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1870270	0.88[EUR][1000 genomes]
rs2067498	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4077350	0.83[EUR][1000 genomes]
rs4128178	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4270717	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4367316	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4416625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4479864	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4513721	0.86[EUR][1000 genomes]
rs4869256	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4869258	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4869259	0.86[EUR][1000 genomes]
rs4869260	0.86[EUR][1000 genomes]
rs4869264	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4869266	0.84[EUR][1000 genomes]
rs4998057	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6556899	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6556900	0.86[EUR][1000 genomes]
rs66683317	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6866723	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6873504	0.86[EUR][1000 genomes]
rs6879658	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6879847	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6884999	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6886983	0.84[EUR][1000 genomes]
rs6889697	0.86[EUR][1000 genomes]
rs6894768	0.86[EUR][1000 genomes]
rs6895121	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7341111	0.80[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7700425	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7702346	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7702646	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7710337	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7715650	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7717351	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7734224	0.82[CEU][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7734985	0.85[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9314163	0.89[EUR][1000 genomes]
rs9314164	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9314165	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758003	chr5:95231706-95540433	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	esv2759355	chr5:95231706-95540433	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv823146	chr5:95300912-95453557	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	esv2757121	chr5:95304236-95539536	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	esv34203	chr5:95310985-95452324	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv522097	chr5:95347786-95425199	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv522465	chr5:95347786-95425199	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
9	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95402600-95423800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:95410800-95420400	Weak transcription	Stomach Mucosa	stomach
3	chr5:95412000-95420800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:95413200-95419800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:95415400-95429000	Weak transcription	HSMMtube	muscle
6	chr5:95415800-95420400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:95416400-95419200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:95416600-95419200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:95416600-95421600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr5:95416800-95426600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:95417000-95420200	Weak transcription	A549	lung
12	chr5:95417000-95429200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr5:95417200-95418800	Weak transcription	NHDF-Ad	bronchial
14	chr5:95417200-95419000	Weak transcription	Small Intestine	intestine
15	chr5:95417200-95419000	Weak transcription	Osteobl	bone
16	chr5:95417200-95419800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr5:95417200-95420400	Weak transcription	Pancreas	Pancrea
18	chr5:95417200-95420400	Weak transcription	HepG2	liver
19	chr5:95417200-95429000	Weak transcription	Left Ventricle	heart
20	chr5:95417400-95418600	Weak transcription	Hela-S3	cervix
21	chr5:95417400-95418800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:95417400-95419000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr5:95417400-95419000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:95417400-95419000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr5:95417400-95419000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr5:95417400-95420400	Weak transcription	NHEK	skin
27	chr5:95417600-95418600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr5:95417800-95419000	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr5:95418000-95419200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr5:95418000-95419600	Enhancers	HSMM	muscle
31	chr5:95418000-95421000	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr5:95418000-95421400	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr5:95418000-95421600	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr5:95418000-95425800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr5:95418200-95419200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:95418200-95419400	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr5:95418200-95420000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr5:95418200-95420400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr5:95418200-95420400	Weak transcription	HMEC	breast
40	chr5:95418200-95421400	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr5:95418200-95430800	Weak transcription	Esophagus	oesophagus

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