Variant report

Variant	rs6897052
Chromosome Location	chr5:115633855-115633856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115632385..115634405-chr5:115635053..115637473,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1031363	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1422498	0.80[YRI][hapmap]
rs1549629	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1567336	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs17138918	1.00[CEU][hapmap]
rs17139210	0.83[YRI][hapmap]
rs17139218	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17139272	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17139308	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17139323	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17139432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17139507	0.96[EUR][1000 genomes]
rs2063251	1.00[CEU][hapmap]
rs2900096	1.00[CEU][hapmap]
rs4342363	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4392665	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4403214	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs58502196	1.00[AMR][1000 genomes]
rs58594358	1.00[AMR][1000 genomes]
rs60462627	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61263877	1.00[AMR][1000 genomes]
rs6861593	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs6863773	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6872204	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs6887806	0.82[CEU][hapmap]
rs6891466	0.82[CEU][hapmap]
rs7701626	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs7701783	1.00[AMR][1000 genomes]
rs7706895	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7708270	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7714974	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7728830	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7729217	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7732371	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34146	chr5:115315944-115729919	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv2755349	chr5:115384101-115733101	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv882743	chr5:115501792-115634127	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv882746	chr5:115566026-115704566	Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv882747	chr5:115566636-115662510	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1017983	chr5:115578765-115713688	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv882748	chr5:115584159-115669950	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115613400-115641600	Weak transcription	HSMM	muscle
2	chr5:115625600-115634000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:115625600-115639200	Weak transcription	Fetal Stomach	stomach
4	chr5:115625600-115643000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:115626600-115641600	Weak transcription	Fetal Brain Male	brain
6	chr5:115626800-115642200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:115627200-115635200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:115627800-115639200	Weak transcription	Placenta	Placenta
9	chr5:115628000-115643800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:115628400-115639200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:115628400-115641200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:115628600-115639400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:115628600-115643400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:115629000-115643800	Weak transcription	HUVEC	blood vessel
15	chr5:115629400-115638200	Weak transcription	Pancreas	Pancrea
16	chr5:115629400-115638400	Weak transcription	Right Ventricle	heart
17	chr5:115630800-115634000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr5:115631400-115636200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:115631400-115637800	Weak transcription	Fetal Thymus	thymus
20	chr5:115631800-115640600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:115631800-115641800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr5:115632000-115634200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
23	chr5:115632000-115634800	ZNF genes & repeats	Primary T cells from cord blood	blood
24	chr5:115632000-115639200	Weak transcription	Lung	lung
25	chr5:115632000-115643000	Weak transcription	NH-A	brain
26	chr5:115632200-115634000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
27	chr5:115632200-115634600	ZNF genes & repeats	Primary B cells from cord blood	blood
28	chr5:115632200-115635600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr5:115632400-115634200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
30	chr5:115632600-115634600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
31	chr5:115632600-115640400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr5:115632600-115640600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr5:115632600-115643400	Weak transcription	Stomach Mucosa	stomach
34	chr5:115632800-115639600	Weak transcription	Brain Angular Gyrus	brain
35	chr5:115632800-115642600	Weak transcription	NHDF-Ad	bronchial
36	chr5:115633000-115634200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
37	chr5:115633000-115634600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
38	chr5:115633000-115634600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
39	chr5:115633000-115635800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr5:115633200-115634000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
41	chr5:115633200-115634000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr5:115633200-115634200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
43	chr5:115633200-115634200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
44	chr5:115633200-115634200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr5:115633200-115634200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
46	chr5:115633200-115634200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
47	chr5:115633200-115634200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
48	chr5:115633200-115634200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
49	chr5:115633200-115634200	ZNF genes & repeats	Fetal Intestine Small	intestine
50	chr5:115633200-115634200	ZNF genes & repeats	Left Ventricle	heart

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