Variant report

Variant	rs6897362
Chromosome Location	chr5:76110217-76110218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:145)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:145 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr5:76109878-76110543	A549	lung:	n/a	n/a
2	MAX	chr5:76109846-76110580	A549	lung:	n/a	n/a
3	EP300	chr5:76109825-76110597	A549	lung:	n/a	n/a
4	RCOR1	chr5:76109964-76110424	Hela-S3	cervix:	n/a	n/a
5	FOXP2	chr5:76110123-76110353	PFSK-1	brain:	n/a	n/a
6	GATA3	chr5:76109794-76110701	A549	lung:	n/a	n/a
7	REST	chr5:76109972-76110486	PFSK-1	brain:	n/a	n/a
8	STAT3	chr5:76110042-76110345	MCF10A-Er-Src	breast:	n/a	chr5:76110301-76110313
9	REST	chr5:76109796-76110467	A549	lung:	n/a	n/a
10	FOSL1	chr5:76109808-76110539	HCT-116	colon:	n/a	n/a
11	MYC	chr5:76110043-76110341	MCF10A-Er-Src	breast:	n/a	n/a
12	CEBPB	chr5:76110039-76110425	IMR90	lung:	n/a	n/a
13	TEAD4	chr5:76110011-76110492	A549	lung:	n/a	n/a
14	FOS	chr5:76110020-76110387	MCF10A-Er-Src	breast:	n/a	chr5:76110243-76110254
15	MYC	chr5:76109999-76110389	Hela-S3	cervix:	n/a	n/a
16	MAX	chr5:76109863-76110569	SK-N-SH	brain:	n/a	n/a
17	TCF12	chr5:76109703-76110525	A549	lung:	n/a	n/a
18	GATA3	chr5:76110123-76110351	T-47D	breast:	n/a	n/a
19	YY1	chr5:76110062-76110321	HCT-116	colon:	n/a	n/a
20	GATA3	chr5:76110010-76110477	MCF-7	breast:	n/a	n/a
21	GATA3	chr5:76109609-76110714	SK-N-SH	brain:	n/a	n/a
22	SIN3AK20	chr5:76109958-76110415	SK-N-SH	brain:	n/a	n/a
23	YY1	chr5:76110038-76110285	A549	lung:	n/a	n/a
24	JUND	chr5:76109840-76110598	HCT-116	colon:	n/a	n/a
25	TCF12	chr5:76109884-76110456	A549	lung:	n/a	n/a
26	TCF7L2	chr5:76109995-76110490	Hela-S3	cervix:	n/a	n/a
27	GATA3	chr5:76109825-76110576	MCF-7	breast:	n/a	n/a
28	RAD21	chr5:76109849-76110509	A549	lung:	n/a	n/a
29	GATA3	chr5:76109849-76110566	MCF-7	breast:	n/a	n/a
30	POLR2A	chr5:76109794-76110248	IMR90	lung:	n/a	n/a
31	EP300	chr5:76109689-76110719	SK-N-SH	brain:	n/a	n/a
32	CREB1	chr5:76110050-76110330	A549	lung:	n/a	n/a
33	YY1	chr5:76110130-76110304	HCT-116	colon:	n/a	n/a
34	SMC3	chr5:76109994-76110390	Hela-S3	cervix:	n/a	n/a
35	NR2F2	chr5:76109903-76110477	MCF-7	breast:	n/a	n/a
36	TCF7L2	chr5:76110054-76110402	HCT-116	colon:	n/a	n/a
37	POLR2A	chr5:76109975-76110520	HUVEC	blood vessel:	n/a	n/a
38	FOXM1	chr5:76109946-76110605	SK-N-SH	brain:	n/a	n/a
39	RAD21	chr5:76109817-76110364	A549	lung:	n/a	n/a
40	JUND	chr5:76109790-76110614	SK-N-SH	brain:	n/a	n/a
41	GATA2	chr5:76110025-76110498	HUVEC	blood vessel:	n/a	n/a
42	JUND	chr5:76110155-76110326	K562	blood:	n/a	n/a
43	CREB1	chr5:76110138-76110320	A549	lung:	n/a	n/a
44	JUND	chr5:76109821-76110546	HCT-116	colon:	n/a	n/a
45	CEBPB	chr5:76109982-76110434	A549	lung:	n/a	n/a
46	FOSL2	chr5:76109882-76110389	A549	lung:	n/a	n/a
47	TEAD4	chr5:76109922-76110475	A549	lung:	n/a	n/a
48	RAD21	chr5:76109928-76110408	IMR90	lung:	n/a	n/a
49	STAT3	chr5:76109977-76110402	Hela-S3	cervix:	n/a	chr5:76110301-76110313
50	BRCA1	chr5:76110002-76110390	Hela-S3	cervix:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:76103612..76107653-chr5:76108707..76113004,3	MCF-7	breast:

No data

Variant related genes	Relation type
F2RL1	TF binding region

Extended variants
information (count: 50 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10058498	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10059976	0.87[ASN][1000 genomes]
rs12187125	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13162638	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13173178	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1529505	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2115499	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2242995	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2243003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2243020	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2243022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2243026	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2243029	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2243031	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2243051	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2243053	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2243057	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2243059	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4380630	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs444403	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4591731	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703719	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4704365	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6453250	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453253	0.88[CEU][hapmap]
rs66946336	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6880329	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6887035	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6894167	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703930	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709688	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv462213	chr5:76067624-76112869	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv598682	chr5:76067624-76112869	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1015997	chr5:76079720-76129241	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1031491	chr5:76083382-76129241	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2763908	chr5:76083394-76134777	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv598683	chr5:76086597-76129053	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv882210	chr5:76086597-76140337	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1022431	chr5:76086795-76127170	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1020397	chr5:76086795-76129241	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv598684	chr5:76086795-76130113	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1025151	chr5:76086795-76134777	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1025061	chr5:76087544-76129241	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1033086	chr5:76088861-76129241	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv1021460	chr5:76089512-76129241	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv1018194	chr5:76090951-76129241	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv598685	chr5:76092225-76128521	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv882211	chr5:76100536-76125577	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6897362	F2R	cis	Muscle Skeletal	GTEx
rs6897362	F2RL1	cis	Whole Blood	GTEx

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76102600-76114400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:76105400-76114200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:76107200-76111400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:76108600-76113800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:76109400-76114200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:76109600-76110400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:76109600-76113000	Enhancers	Hela-S3	cervix
8	chr5:76109600-76113200	Enhancers	HMEC	breast
9	chr5:76109600-76114000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:76109600-76114000	Enhancers	NHEK	skin
11	chr5:76109800-76110400	Enhancers	NHLF	lung
12	chr5:76109800-76110600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:76109800-76110600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:76109800-76110600	Enhancers	HUVEC	blood vessel
15	chr5:76109800-76110600	Enhancers	Osteobl	bone
16	chr5:76109800-76112200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:76109800-76113200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:76110000-76110400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr5:76110000-76110400	Enhancers	HSMMtube	muscle
20	chr5:76110000-76110400	Weak transcription	NH-A	brain
21	chr5:76110000-76110400	Enhancers	NHDF-Ad	bronchial
22	chr5:76110000-76110600	Flanking Active TSS	A549	lung
23	chr5:76110000-76113400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:76110200-76114200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr5:76110200-76114400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr5:76110200-76114400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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