Variant report

Variant	rs6900991
Chromosome Location	chr6:70623836-70623837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70589300..70592044-chr6:70621641..70624143,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16868383	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs6941069	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs7748877	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs9454927	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs9454929	1.00[AMR][1000 genomes]
rs9689515	0.87[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv886141	chr6:70590638-70694162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70605600-70627800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:70618000-70624000	Weak transcription	HSMM	muscle
3	chr6:70618000-70625000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:70622400-70624200	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:70622600-70630000	Weak transcription	GM12878-XiMat	blood
6	chr6:70623200-70625800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:70623400-70624200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:70623400-70624400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:70623600-70624200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:70623600-70624200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:70623600-70624200	Enhancers	Fetal Heart	heart
12	chr6:70623600-70624200	Enhancers	Fetal Muscle Leg	muscle
13	chr6:70623600-70624200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:70623600-70624200	Enhancers	HSMMtube	muscle
15	chr6:70623600-70624800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr6:70623800-70624200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:70623800-70624200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:70623800-70624200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:70623800-70624800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:70623800-70626200	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links